Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CBG68312.1Putative oxygenase. (349 aa)    
Predicted Functional Partners:
CBG69734.1
Conserved hypothetical protein.
  
  
 0.586
CBG72240.1
Putative monooxygenase.
  
  
 0.580
CBG68294.1
Conserved hypothetical protein.
       0.526
rpmF
Putative 50S ribosomal protein; Belongs to the bacterial ribosomal protein bL32 family.
       0.525
CBG68311.1
Putative secreted hydrolase; No full-length matches.
       0.516
CBG71676.1
Putative major facilitator efflux protein.
  
     0.422
CBG74183.1
Conserved hypothetical protein.
       0.420
katE
Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide.
 
   
 0.418
CBG73642.1
Putative transmembrane efflux protein.
  
     0.414
cmlR1
Putative chloramphenicol resistance protein.
  
     0.410
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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