Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hopCPutative phytoene dehydrogenase. (475 aa)    
Predicted Functional Partners:
hopD
Putative squalene/phytoene synthase.
  
 0.958
hopE
Putative squalene/phytoene synthase.
 
  
 0.946
hopA
Putative squalene-hopene cyclase; See SAV annotation - squalene/hopene gene cluster.
 
   
 0.928
CBG68452.1
Conserved hypothetical protein.
 
  
 0.926
CBG68453.1
Putative lipoprotein.
 
   
 0.920
hopB
Putative polyprenyl synthatase; PMID: 12761202; Belongs to the FPP/GGPP synthase family.
 
   
 0.850
CBG68449.1
Putative aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.659
crtB-1
Putative phytoene synthase; PMID:8917308; PMID:15716454; carotenoid pigment gene cluster.
 
  
 0.580
CBG68448.1
Putative DNA-binding protein.
       0.566
CBG74279.1
Putative integral membrane protein.
 
     0.537
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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