Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
CBG68519.1Putative transcriptional regulator. (153 aa)    
Predicted Functional Partners:
CBG68520.1
Protocatechuate 3,4-dioxygenase beta subunit.
 
   
 0.843
CBG68521.1
Protocatechuate 3,4-dioxygenase alpha subunit.
 
     0.728
CBG68522.1
Putative 3-carboxy-cis,cis-muconate cycloisomerase.
 
    0.518
CBG68523.1
Putative 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase.
     
 0.452
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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