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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG68561.1Putative DNA-binding protein. (314 aa)    
Predicted Functional Partners:
txtR
Cellobiose-dependent regulator TxtR; PMID: 15686551; PMID:11004184; PMID:8631685; PMID: 17919290; no significant Pfam domain matches; strong match to S. turgidiscabies pathogenicity island; TTA-Leu codon(s) 203 may indicate regulation by BldA.
  
     0.762
CBG75560.1
Putative AraC family regulatory protein.
  
     0.759
CBG68562.1
Putative oxidoreductase.
 
  
 0.723
CBG68564.1
Putative catechol 1,2-dioxygenase.
 
   
 0.719
CBG68563.1
Putative alcohol dehydrogenase; PMID:9171435; PMID:8226615.
 
     0.651
CBG74936.1
Putative transcriptional regulator.
  
     0.524
CBG68560.1
Conserved hypothetical protein; No full-length matches.
       0.520
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.