STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG68562.1Putative oxidoreductase. (596 aa)    
Predicted Functional Partners:
CBG68564.1
Putative catechol 1,2-dioxygenase.
 
  
 0.935
CBG68563.1
Putative alcohol dehydrogenase; PMID:9171435; PMID:8226615.
 
  
 0.905
CBG68399.1
Putative oxidoreductase; PMID:1650730; PMID:8253693; PMID:10099135.
  
  
 
0.903
CBG69476.1
Putative monooxygenase component; PMID: 15489427.
  
  
 
0.903
CBG68561.1
Putative DNA-binding protein.
 
  
 0.723
CBG69477.1
Putative catechol 1,2-dioxygenase.
 
  
 0.678
catA
Catechol 1,2-dioxygenase.
 
  
 0.656
CBG68397.1
Putative alcohol dehydrogenase; PMID:9171435; PMID:8226615.
 
  
 0.556
CBG69478.1
Putative alcohol dehydrogenase; PMID:9171435; PMID:8226615.
 
  
 0.556
CBG75996.1
Conserved hypothetical protein.
 
   
 0.449
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.