Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CBG68581.1 | CBG68582.1 | SCAB_14311 | SCAB_14321 | Putative transposase. | Putative transposase; PMID:16305230; PMID: 2821490; see also SCAB21921, SCAB33271, SCAB77071; strong blastn hits to S. turgidiscabies PAI, 36% aa_id to transposase on S. turgidiscabies PAI. | 0.554 |
CBG68581.1 | SCAB_1001 | SCAB_14311 | SCAB_1001 | Putative transposase. | Putative mini-circle(IS117)-related transposase; PMID:2575701; PMID: 15686551. | 0.463 |
CBG68582.1 | CBG68581.1 | SCAB_14321 | SCAB_14311 | Putative transposase; PMID:16305230; PMID: 2821490; see also SCAB21921, SCAB33271, SCAB77071; strong blastn hits to S. turgidiscabies PAI, 36% aa_id to transposase on S. turgidiscabies PAI. | Putative transposase. | 0.554 |
CBG68582.1 | CBG70919.1 | SCAB_14321 | SCAB_38381 | Putative transposase; PMID:16305230; PMID: 2821490; see also SCAB21921, SCAB33271, SCAB77071; strong blastn hits to S. turgidiscabies PAI, 36% aa_id to transposase on S. turgidiscabies PAI. | Conserved hypothetical protein. | 0.412 |
CBG68582.1 | SCAB_1001 | SCAB_14321 | SCAB_1001 | Putative transposase; PMID:16305230; PMID: 2821490; see also SCAB21921, SCAB33271, SCAB77071; strong blastn hits to S. turgidiscabies PAI, 36% aa_id to transposase on S. turgidiscabies PAI. | Putative mini-circle(IS117)-related transposase; PMID:2575701; PMID: 15686551. | 0.665 |
CBG68582.1 | SCAB_4771 | SCAB_14321 | SCAB_4771 | Putative transposase; PMID:16305230; PMID: 2821490; see also SCAB21921, SCAB33271, SCAB77071; strong blastn hits to S. turgidiscabies PAI, 36% aa_id to transposase on S. turgidiscabies PAI. | Putative integral membrane protein; No significant db matches; TTA-Leu codon(s) 13 may indicate regulation by BldA. | 0.432 |
CBG70919.1 | CBG68582.1 | SCAB_38381 | SCAB_14321 | Conserved hypothetical protein. | Putative transposase; PMID:16305230; PMID: 2821490; see also SCAB21921, SCAB33271, SCAB77071; strong blastn hits to S. turgidiscabies PAI, 36% aa_id to transposase on S. turgidiscabies PAI. | 0.412 |
SCAB_1001 | CBG68581.1 | SCAB_1001 | SCAB_14311 | Putative mini-circle(IS117)-related transposase; PMID:2575701; PMID: 15686551. | Putative transposase. | 0.463 |
SCAB_1001 | CBG68582.1 | SCAB_1001 | SCAB_14321 | Putative mini-circle(IS117)-related transposase; PMID:2575701; PMID: 15686551. | Putative transposase; PMID:16305230; PMID: 2821490; see also SCAB21921, SCAB33271, SCAB77071; strong blastn hits to S. turgidiscabies PAI, 36% aa_id to transposase on S. turgidiscabies PAI. | 0.665 |
SCAB_4771 | CBG68582.1 | SCAB_4771 | SCAB_14321 | Putative integral membrane protein; No significant db matches; TTA-Leu codon(s) 13 may indicate regulation by BldA. | Putative transposase; PMID:16305230; PMID: 2821490; see also SCAB21921, SCAB33271, SCAB77071; strong blastn hits to S. turgidiscabies PAI, 36% aa_id to transposase on S. turgidiscabies PAI. | 0.432 |