STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAB_1481Putative non-ribosomal peptide synthase component. (1525 aa)    
Predicted Functional Partners:
CBG71460.1
Putative polyketide synthase; PMID:14652074; PMID:10767533; many ~30% similar.
 
 
0.998
CBG75343.1
Putative type I polyketide synthase; PMID:16207901; PMID:16079135; PMID:11358695.
 
 0.996
SCAB_1461
Putative oxidoreductase.
  
 0.994
SCAB_1471
Putative non-ribosomal peptide synthase; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
0.994
CBG74925.1
Putative polyketide synthase.
 
 0.994
CBG75341.1
Putative type I polyketide synthase.
 
 0.992
SCAB_1421
Putative thioesterase; PMID:12940979.
  
 0.991
SCAB_1411
Putative AMP-binding NRPS ligase; PMID:11029592; PMID:12221282.
 
 
0.990
CBG75342.1
Putative type I polyketide synthase.
 
 0.990
txtA
PMID: 11115114; PMID: 15686551; thaxtomin synthesis - pathogenicity associated.
 
 
0.989
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.