Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CBG68677.1Putative ABC transporter, substrate binding protein. (320 aa)    
Predicted Functional Partners:
CBG68678.1
Putative taurine transport protein (ABC superfamily, membrane).
 
 
 0.988
CBG68679.1
ABC transporter protein, membrane protein.
 
 
 0.988
CBG68680.1
ATP-binding component of ABC transporter.
 
 
 0.972
CBG72994.1
Putative transporter transmembrane subunit; PMID: 10506196.
 
 
 0.871
CBG70873.1
Putative binding-protein-dependent transport system.
 
 
 0.834
CBG69105.1
Putative transport system integral membrane protein.
 
 
 0.827
fkbP
Peptidyl-prolyl cis-trans isomerase subunit; PMID:1381710.
   
    0.808
CBG69104.1
Putative ABC transporter ATP-binding protein.
 
 
 0.783
CBG70874.1
Putative ABC-transporter ATP-binding subunit.
 
 
 0.783
infA
Translational initiation factor IF1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
   
    0.777
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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