Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SCAB_1631Hypothetical protein. (81 aa)    
Predicted Functional Partners:
CBG68821.1
Putative respiratory chain oxidoreductase; TTA-Leu codon(s) 59 may indicate regulation by BldA.
  
 0.931
SCAB_1621
Conserved hypothetical protein.
   
   0.898
SCAB_1641
Conserved hypothetical protein.
       0.874
SCAB_1611
Putative 2-nitropropane dioxygenase.
  
 
 0.765
SCAB_1601
Putative hydrolase.
   
   0.741
SCAB_1581
Conserved hypothetical protein; Some similar proteins are annotated as phosphopantetheinyl transferases, )BAF92600, EDP57114) but no conserved domain found; may be related to gene cluster SCAB1381-1481.
   
 
 0.731
SCAB_1591
Conserved hypothetical protein.
       0.691
SCAB_1651
Conserved hypothetical protein.
       0.674
CBG68557.1
Putative PROBABLE SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 0.664
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 0.655
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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