Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG68768.1Conserved hypothetical protein. (415 aa)    
Predicted Functional Partners:
CBG68767.1
Putative restriction enzyme.
 
 
 0.982
CBG68772.1
Putative restriction enzyme.
 
 
 0.924
CBG73597.1
Putative ATPase.
 
 
 0.924
CBG71145.1
Hypothetical protein.
  
 
 0.610
CBG68750.1
Conserved hypothetical protein.
 
     0.607
CBG68748.1
Putative serine/threonine-protein kinase.
 
     0.583
SCAB_0391
Putative IS transposase; PMID:11895946; TTA-Leu codon(s) 338 may indicate regulation by BldA.
  
     0.553
CBG68749.1
Putative helicase SNF2 family protein.
 
   
 0.551
CBG70295.1
Conserved hypothetical protein.
  
     0.452
CBG75817.1
Conserved hypothetical protein.
  
     0.446
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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