Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CBG68809.1Putative secreted solute binding protein. (345 aa)    
Predicted Functional Partners:
CBG68810.1
ABC transporter integral membrane protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.971
CBG68811.1
ABC transporter ATP binding protein.
 
 
 0.933
CBG68486.1
Putative D-ribose-binding protein precursor.
  
  
 
0.927
SCAB_8991
Putative bifunctional carbohydrate binding and transport protein.
  
  
 
0.924
CBG72890.1
Putative carbohydrate-binding protein; PMID:3011794.
  
  
 
0.922
SCAB_0681
Putative secreted carbohydrate-binding transport protein.
  
  
 
0.915
SCAB_6481
Putative ABC transporter, secreted binding protein.
  
  
 
0.915
CBG74906.1
Putative substrate-binding component of ABC transporter.
  
  
 
0.914
CBG75377.1
Putative secreted protein.
  
  
 
0.913
SCAB_4711
Putative secreted protein.
     
  0.900
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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