Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCAB_1701Conserved hypothetical protein. (712 aa)    
Predicted Functional Partners:
SCAB_1681
Conserved hypothetical protein.
 
     0.864
SCAB_1691
Putative membrane transport protein.
       0.773
CBG71877.1
Putative phage protein.
  
     0.627
CBG73329.1
Conserved hypothetical protein.
 
  
 0.615
SCAB_4781
Conserved hypothetical protein.
  
  
 0.614
CBG74612.1
Putative integral membrane protein.
  
  
 0.614
CBG75900.1
Putative factor C morphological differentiation homolog; PMID:10517577; PMID:6767606.
  
    0.553
CBG70305.1
Putative Lantibiotic dehydratase; Lantibiotic biosynthesis.
  
  
 0.521
CBG75850.1
Conserved hypothetical protein.
  
     0.509
SCAB_1711
Conserved hypothetical protein.
       0.504
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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