Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG68848.1Conserved hypothetical protein. (405 aa)    
Predicted Functional Partners:
CBG68849.1
Putative secreted protein.
       0.746
CBG68847.1
Conserved hypothetical protein.
       0.740
gltB
Putative Ferredoxin-dependent glutamate synthase 1; PMID:7727752.
  
  
 0.577
CBG68465.1
Putative integral membrane transferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
    0.548
CBG70201.1
Conserved hypothetical protein.
  
     0.543
SCAB_5001
Conserved hypothetical protein; PMID:16208464.
 
    0.418
CBG72617.1
Putative membrane protein.
  
     0.418
CBG72193.1
Putative calcium binding protein.
  
  
 0.403
CBG73823.1
Conserved hypothetical protein.
  
     0.402
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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