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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gvpJPutative gas vesicle synthesis protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. (122 aa)    
Predicted Functional Partners:
gvpL
Putative gas vesicle protein.
 
   
 0.973
gvpK
Putative gas vesicle synthesis protein.
 
   
 0.961
gvpS
Putative gas vesicle synthesis protein.
 
   
 0.960
gvpG
Putative gas vesicle synthesis protein.
 
   
 0.955
CBG68865.1
Conserved hypothetical protein.
 
     0.944
gvpF
Putative gas vesicle synthesis protein.
 
   
 0.907
gvpO
Putative gas vesicle synthesis protein.
 
   
 0.887
CBG68866.1
Conserved hypothetical protein.
       0.869
CBG70926.1
Putative gas vesicle synthesis protein.
 
   
 0.836
CBG70932.1
Putative gas vesicle synthesis protein K; PMID: 9573198.
 
   
 0.836
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.