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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG68905.1Putative methyltransferase; Cluster 0445 with SCAB27291. (262 aa)    
Predicted Functional Partners:
CBG71120.1
Putative integral membrane protein.
  
 
   0.720
CBG71115.1
Conserved hypothetical protein.
  
     0.706
CBG72386.1
ftsK/spoIIIE family protein; PMID: 7763542; PMID: 8366038; TTA-Leu codon(s) 428 may indicate regulation by BldA.
  
     0.655
CBG72491.1
Putative membrane protein.
  
     0.647
CBG72592.1
Putative binding-protein-dependent transporter.
  
     0.613
CBG71557.1
Conserved hypothetical protein.
  
     0.584
CBG70035.1
Putative plasmid transfer protein; PMID: 8366038.
  
     0.555
CBG70033.1
Putative SpdA-like protein; PMID: 9620953.
  
     0.544
CBG73756.1
Putative membrane protein.
  
     0.540
CBG72223.1
Putative membrane protein; No significant db matches.
  
     0.521
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.