Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG68914.1Conserved hypothetical protein. (166 aa)    
Predicted Functional Partners:
CBG68915.1
Putative oxygenase; PMID:16269733; PMID:2345149; PMID:7557483; PMID:15561847; PMID:15752735; Belongs to the cytochrome P450 family.
       0.538
CBG68916.1
Conserved hypothetical protein.
       0.538
CBG68917.1
Conserved hypothetical protein; Cluster 0429 with SCAB16661.
       0.538
CBG68918.1
Conserved hypothetical protein.
       0.534
CBG73609.1
Putative membrane protein.
  
    0.521
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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