Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CBG68917.1Conserved hypothetical protein; Cluster 0429 with SCAB16661. (388 aa)    
Predicted Functional Partners:
CBG68916.1
Conserved hypothetical protein.
 
     0.953
CBG68918.1
Conserved hypothetical protein.
 
  
 0.951
CBG68919.1
Conserved hypothetical protein.
 
     0.905
CBG68920.1
Conserved hypothetical protein.
 
     0.869
CBG68921.1
Putative membrane protein; N terminal extent by first start before expressed tryptic fragment site; TTA-Leu codon(s) 7 may indicate regulation by BldA.
 
     0.863
CBG68802.1
Conserved hypothetical protein.
 
     0.803
CBG74902.1
Putative secreted glycosyl hydrolase.
 
  
 0.801
CBG68801.1
Conserved hypothetical protein.
 
  
 0.800
CBG68806.1
Putative secreted glycosyl hydrolase; TTA-Leu codon(s) 17 may indicate regulation by BldA.
 
  
 0.797
CBG74898.1
Putative secreted glycosyl hydrolase.
 
  
 0.793
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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