Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG69049.1Putative regulatory protein. (561 aa)    
Predicted Functional Partners:
CBG69048.1
Putative oxidoreductase subunit.
 
     0.753
CBG69050.1
Conserved hypothetical protein.
       0.745
CBG69047.1
Putative oxidoreductase.
       0.682
CBG69045.1
Putative permease SC6C5.09.
       0.619
CBG68931.1
Putative DNA-binding protein.
  
     0.601
CBG69046.1
Putative oxidoreductase.
 
     0.566
CBG71729.1
Conserved hypothetical protein.
  
     0.528
CBG74388.1
Putative sporulation-associated protein; PMID:2123814.
  
     0.496
CBG70076.1
Conserved hypothetical protein.
  
     0.424
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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