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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG69090.1Putative oxidoreductase; PMID: 12598647; PMID:11048953. (350 aa)    
Predicted Functional Partners:
CBG69089.1
Putative NRPS-related protein.
  
 0.972
CBG69091.1
Conserved hypothetical protein.
 
    0.908
CBG69088.1
Hexapeptide repeat protein with possible carrier domain.
 
  
 0.898
CBG69092.1
Putative pyridoxal-phosphate dependent enzyme.
 
   
 0.839
SCAB_3221
NRPS multienzyme (AMP-binding and pcp); PMID:15112993; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.787
CBG73303.1
Putative AMP-binding protein; PMID: 15616300; PMID:12060705.
  
 0.706
txtB
Thaxtomin synthetase B; PMID: 11115114; PMID: 15686551; PMID: 10780924; thaxtomin synthesis - pathogenicity associated.
  
 0.649
txtA
PMID: 11115114; PMID: 15686551; thaxtomin synthesis - pathogenicity associated.
  
 0.622
CBG71460.1
Putative polyketide synthase; PMID:14652074; PMID:10767533; many ~30% similar.
 
  
 0.610
SCAB_3321
Putative non-ribosomal peptide synthetase; PMID:10801488; PMID:9006024; PMID:16647040; PMID:9427658.
  
 0.604
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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