Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rarE1RarE (conservon) homologue; PMID:12657469; conservon; Belongs to the cytochrome P450 family. (367 aa)    
Predicted Functional Partners:
CBG71460.1
Putative polyketide synthase; PMID:14652074; PMID:10767533; many ~30% similar.
  
 0.856
CBG75343.1
Putative type I polyketide synthase; PMID:16207901; PMID:16079135; PMID:11358695.
 
 0.822
rarA1
RarA (conservon) homologue; PMID:12657469; conservon.
 
 
  0.794
CBG70284.1
Putative P450-like protein; PMID: 15686551; strong match to S. turgidiscabies pathogenicity island; Belongs to the cytochrome P450 family.
  
     0.770
CBG72688.1
Conserved hypothetical protein; Belongs to the cytochrome P450 family.
  
     0.770
CBG69041.1
Putative P450-like protein; Belongs to the cytochrome P450 family.
  
     0.764
SCAB_90271
Conserved hypothetical protein; Ochre stop after codon 55; Belongs to the cytochrome P450 family.
  
     0.763
txtB
Thaxtomin synthetase B; PMID: 11115114; PMID: 15686551; PMID: 10780924; thaxtomin synthesis - pathogenicity associated.
  
 0.717
txtA
PMID: 11115114; PMID: 15686551; thaxtomin synthesis - pathogenicity associated.
  
 0.717
rarC1
RarC (conservon) homologue; Conservon.
 
  0.677
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.