STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG69149.1Conserved hypothetical protein. (194 aa)    
Predicted Functional Partners:
CBG69145.1
RarA (conservon) homolog; PMID: 12657469; truncated conservon.
 
   
 0.769
CBG69147.1
RarC (conservon) homolog; PMID: 12657469; truncated conservon; TTA-Leu codon(s) 14 may indicate regulation by BldA.
 
   
 0.718
CBG69146.1
RarB (conservon) homolog; PMID: 12657469; truncated conservon.
 
   
 0.715
CBG69622.1
Putative sensory histidine kinase.
 
 
 
 0.684
CBG69148.1
RarD (conservon) homolog; PMID: 12657469; truncated conservon.
       0.678
CBG73171.1
Putative sensor kinase.
 
 
 
 0.566
SCAB_8071
Putative integral membrane protein.
  
     0.407
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.