Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CBG69228.1Putative phage integrase; PMID:15574907; Belongs to the 'phage' integrase family. (406 aa)    
Predicted Functional Partners:
CBG71912.1
Putative phage integrase.
  
     0.606
CBG69229.1
Hypothetical protein.
     
 0.566
CBG71911.1
Putative phage protein.
  
     0.547
CBG72403.1
Putative DNA-binding protein.
 
   
 0.534
CBG75394.1
Conserved hypothetical protein.
  
     0.473
SCAB_83861
Conserved hypothetical protein (fragment); PMID:16207901; pseudo: frameshifts after codon 43, 106, 180; and deletion - match breaks off codon 87 resumes codon 115.
  
     0.464
CBG69052.1
Conserved hypothetical protein.
  
     0.458
CBG72870.1
Conserved hypothetical protein.
  
    0.447
CBG69494.1
Putative transposase; Cluster 0025 8: SCAB3371, SCAB4481, SCAB7601, SCAB11701, SCAB20281, SCAB40511, SCAB68181.
  
     0.442
CBG71564.1
Putative transposase; Cluster 0025 8: SCAB3371, SCAB4481, SCAB7601, SCAB11701, SCAB20281, SCAB40511, SCAB68181.
  
     0.442
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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