Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG69234.1Hypothetical protein; Cluster 0486 with SCAB7251. (1439 aa)    
Predicted Functional Partners:
CBG69235.1
Conserved hypothetical protein.
 
     0.970
CBG69233.1
Hypothetical protein.
 
 
   0.968
CBG69232.1
Hypothetical protein.
 
 
   0.958
SCAB_7271
Hypothetical protein.
 
 
   0.872
SCAB_7261
Hypothetical protein.
 
 
   0.866
CBG69237.1
Putative helicase SNF2 family protein; Cluster 0487 with SCAB65921.
  
 0.604
CBG70175.1
Putative ATP-dependent DNA helicase.
  
 
 0.586
CBG74177.1
Putative ScpA-like chromosome partitioning protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.512
CBG73592.1
Putative helicase SNF2 family protein; Cluster 0487 with SCAB21231.
  
 0.473
CBG68489.1
Conserved hypothetical protein; PMID: 12791134.
 
     0.459
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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