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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAB_2131Putative substrate-CoA ligase. (530 aa)    
Predicted Functional Partners:
hcaB
2,3-dihydroxy-2,3-dihydrophenylpropionatedehydr og enase; Annotation transferred from E. coli; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
   0.794
bphD
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase BphD; Annotation transferred, perhaps biphenyl catabolism cf PMID: 2160220.
   
   0.788
CBG71460.1
Putative polyketide synthase; PMID:14652074; PMID:10767533; many ~30% similar.
  
0.769
SCAB_2121
Putative membrane protein; No significant db matches.
       0.733
txtA
PMID: 11115114; PMID: 15686551; thaxtomin synthesis - pathogenicity associated.
 
0.677
txtB
Thaxtomin synthetase B; PMID: 11115114; PMID: 15686551; PMID: 10780924; thaxtomin synthesis - pathogenicity associated.
 
0.671
SCAB_3321
Putative non-ribosomal peptide synthetase; PMID:10801488; PMID:9006024; PMID:16647040; PMID:9427658.
  
 
0.615
CBG74925.1
Putative polyketide synthase.
 
 0.573
CBG75341.1
Putative type I polyketide synthase.
 
 0.573
SCAB_1361
Conserved hypothetical protein (fragment); PMID:15328113; PMID:16208464.
  
 0.564
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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