Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG69275.1Putative methyltransferase. (269 aa)    
Predicted Functional Partners:
CBG69274.1
Conserved hypothetical protein.
       0.785
CBG69276.1
Putative phosphotransferase.
       0.785
CBG75327.1
Conserved hypothetical protein.
  
     0.481
CBG69622.1
Putative sensory histidine kinase.
 
 
 
 0.472
CBG71460.1
Putative polyketide synthase; PMID:14652074; PMID:10767533; many ~30% similar.
 
 
 0.442
CBG69470.1
Putative secreted FAD-binding protein; Cluster 0555 with SCAB88941.
 
  0.417
CBG72609.1
Putative integral membrane protein.
 
   
 0.406
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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