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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hcaCFerredoxin subunit of phenylpropionate dioxygenase; Annotation transferred from E. coli. (111 aa)    
Predicted Functional Partners:
hcaE
3-phenylpropionate dioxygenase, alpha subunit; Annotation transferred from E. coli, perhaps 3-phenylpropionic acid breakdown cf PMID: 9603882.
 
 
 0.989
hcaF
3-phenylpropionate dioxygenase, beta subunit; This operon in E. coli encodes a pathway for catabolism of aromatic acids; annotation transferred from E. coli.
 
 
 0.971
SCAB_6861
Putative reductase.
 
 0.957
CBG75965.1
Putative FERREDOXIN REDUCTASE.
 
 0.955
CBG76003.1
Putative ferredoxin reductase; PMID:2670929; PMID:15006757.
 
 0.955
CBG73265.1
Putative ferrodoxin reductase; PMID:16269732; PMID:16269733.
 
 0.948
CBG73774.1
Putative oxidoreductase.
 
 0.948
SCAB_9681
Putative FERREDOXIN REDUCTASE.
  
 0.947
SCAB_2171
Putative aromatic hydrocarbons catabolism-related reductase.
 
 
 0.943
CBG73998.1
Putative iron-sulphur-centre oxidoreductase.
  
  
 
0.918
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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