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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG69348.1Conserved hypothetical protein; Cluster 0530 with SCAB32991. (389 aa)    
Predicted Functional Partners:
CBG69347.1
Conserved hypothetical protein.
       0.772
CBG69349.1
Conserved hypothetical protein.
       0.765
CBG69350.1
Conserved hypothetical protein; Cluster 0531 with SCAB33031.
       0.742
CBG69353.1
Conserved hypothetical protein.
       0.518
CBG69351.1
Conserved hypothetical protein; Cluster 0532 with SCAB33041.
       0.510
CBG69352.1
Conserved hypothetical protein.
       0.508
CBG69354.1
Conserved hypothetical protein; Cluster 0534 with SCAB33061.
       0.449
CBG69355.1
Conserved hypothetical protein.
       0.441
CBG69346.1
Putative glycosyl transferase; PMID:16024079; cluster 0529 with SCAB32941.
       0.424
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.