Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBG69348.1Conserved hypothetical protein; Cluster 0530 with SCAB32991. (389 aa)    
Predicted Functional Partners:
CBG69347.1
Conserved hypothetical protein.
       0.760
CBG69349.1
Conserved hypothetical protein.
       0.754
CBG69350.1
Conserved hypothetical protein; Cluster 0531 with SCAB33031.
       0.735
CBG69353.1
Conserved hypothetical protein.
       0.513
CBG69351.1
Conserved hypothetical protein; Cluster 0532 with SCAB33041.
       0.505
CBG69352.1
Conserved hypothetical protein.
       0.505
CBG69354.1
Conserved hypothetical protein; Cluster 0534 with SCAB33061.
       0.441
CBG69355.1
Conserved hypothetical protein.
       0.441
CBG69346.1
Putative glycosyl transferase; PMID:16024079; cluster 0529 with SCAB32941.
       0.422
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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