STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG69384.1Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (264 aa)    
Predicted Functional Partners:
CBG69383.1
Hypothetical protein.
       0.773
SCAB_5951
Putative short-chain dehydrogenase/oxiroreductase.
  
 
 0.755
CBG68633.1
Putative PROBABLE SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.751
CBG73870.1
Putative dehydrogenase.
  
     0.750
CBG74098.1
Putative oxidoreductase.
  
     0.677
CBG68299.1
Putative short-chain dehydrogenase.
  
     0.613
CBG69386.1
Putative family 2 glycosyl hydrolase; Belongs to the glycosyl hydrolase 2 family.
  
    0.566
SCAB_4901
Putative oxidoreductase.
  
     0.514
CBG69389.1
Putative carboxylesterase; Belongs to the type-B carboxylesterase/lipase family.
  
 0.505
CBG71460.1
Putative polyketide synthase; PMID:14652074; PMID:10767533; many ~30% similar.
  
 
 0.498
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.