Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SCAB_2491Conserved hypothetical protein. (185 aa)    
Predicted Functional Partners:
CBG69638.1
Putative large Pro/Ala/Gly-rich protein.
  
     0.754
CBG68524.1
Putative regulatory protein.
  
     0.753
CBG75746.1
Putative leucine-rich repeat protein.
  
     0.738
CBG75675.1
Conserved hypothetical protein; Belongs to the ComB family.
  
     0.712
CBG74580.1
Conserved hypothetical protein.
  
    0.711
CBG70394.1
Putative lambdoid prophage protein; PMID: 6221115.
  
     0.700
CBG73308.1
Putative type I polyketide synthase component; PMID:14742212; PMID:12791134; cluster 0135 collects two pairs: SCAB3291 and SCAB3301, SCAB62911 and SCAB62921.
  
     0.628
CBG70520.1
Putative membrane protein.
  
    0.615
CBG72785.1
Conserved hypothetical protein; PMID:PMID:2123814.
  
    0.594
CBG70395.1
Putative lambdoid prophage protein; PMID: 6221115; PMID: 8052130.
  
     0.568
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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