Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
bldBBldb; Putative regulator, BldB. (97 aa)    
Predicted Functional Partners:
bldD
BldD regulator of morphogenesis and anitbiotic production; PMID:9515925; PMID:15601697.
      
 0.813
whiG
Sporulation-specific sigma factor WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
      
 0.760
CBG73830.1
Putative membrane protein.
  
     0.628
CBG72882.1
Ftsk/SpoIIIE family protein; PMID: 15870461.
     
 0.602
CBG72894.1
Putative DNA-binding protein.
  
   
 0.569
CBG73750.1
Conserved hypothetical protein.
  
     0.568
CBG72263.1
Conserved hypothetical protein.
  
     0.564
CBG74087.1
Conserved hypothetical protein.
  
     0.554
CBG68856.1
Conserved hypothetical protein.
  
     0.543
CBG68977.1
Putative alpha-N-acetylglucosaminidase.
       0.514
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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