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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG69660.1Conserved hypothetical protein; TTA-Leu codon(s) 14 may indicate regulation by BldA. (395 aa)    
Predicted Functional Partners:
CBG69749.1
Putative heat shock protein (hsp90-family).
 
 0.646
CBG73867.1
Conserved hypothetical protein.
  
     0.633
CBG73868.1
Putative CoA-transferase.
  
     0.583
alaS
Alanine tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.577
CBG73349.1
Putative oxidoreductase.
  
    0.560
CBG69659.1
Putative integral membrane protein; PMID: 15561847; cluster 0576 with SCAB45021.
       0.539
CBG75438.1
CONSERVED HYPOTHETICAL PROTEIN.
  
     0.531
CBG71760.1
Putative non-specific lipid transfer protein.
  
 
   0.530
CBG75439.1
HYPOTHETICAL PROTEIN.
  
 
   0.529
CBG71758.1
Conserved hypothetical protein; Contains hydrophilic region possibly for attachment.
  
     0.526
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.