Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SCAB_2571Hypothetical protein. (377 aa)    
Predicted Functional Partners:
CBG70998.1
Putative acetoin utilization protein.
   
 0.807
CBG73592.1
Putative helicase SNF2 family protein; Cluster 0487 with SCAB21231.
  
 0.582
CBG69237.1
Putative helicase SNF2 family protein; Cluster 0487 with SCAB65921.
  
 0.569
SCAB_2561
Putative membrane protein.
  
    0.517
CBG68183.1
Putative secreted protein; PF03068 unusual in bacteria.
  
     0.482
CBG73201.1
Conserved hypothetical protein.
  
     0.478
CBG71110.1
Putative DNA polymerase III beta chain.
   
  
 0.414
dnaN
DNA polymerase III, beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of r [...]
   
  
 0.412
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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