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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
whiRPutative WhiR transcriptional regulator; PMID: 8885396. (196 aa)    
Predicted Functional Partners:
whiG
Sporulation-specific sigma factor WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.802
CBG69710.1
Putative DNA mediated transformation protein.
  
    0.681
CBG69711.1
Putative magnesium chelatase family protein.
       0.672
CBG69712.1
Conserved hypothetical protein; Belongs to the UPF0102 family.
       0.658
CBG69713.1
Conserved hypothetical protein; PMID: 10520735.
       0.624
mutT
Putative mutT DNA repair protein; PMID: 10520735; Belongs to the Nudix hydrolase family.
       0.610
CBG69715.1
Putative signal peptidase; PMID: 10520735; Belongs to the peptidase S26 family.
       0.610
CBG69716.1
Putative signal peptidase; Cluster 0579 with SCAB26131; Belongs to the peptidase S26 family.
       0.602
CBG69717.1
Putative signal peptidase; PMID: 10520735; cluster 0579 with SCAB26121; Belongs to the peptidase S26 family.
       0.602
CBG69718.1
Putative signal peptidase; PMID: 10520735; Belongs to the peptidase S26 family.
       0.602
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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