Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
whiRPutative WhiR transcriptional regulator; PMID: 8885396. (196 aa)    
Predicted Functional Partners:
whiG
Sporulation-specific sigma factor WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.798
CBG69710.1
Putative DNA mediated transformation protein.
  
    0.669
CBG69711.1
Putative magnesium chelatase family protein.
       0.659
CBG69712.1
Conserved hypothetical protein; Belongs to the UPF0102 family.
       0.646
CBG69713.1
Conserved hypothetical protein; PMID: 10520735.
       0.611
mutT
Putative mutT DNA repair protein; PMID: 10520735; Belongs to the Nudix hydrolase family.
       0.596
CBG69715.1
Putative signal peptidase; PMID: 10520735; Belongs to the peptidase S26 family.
       0.596
CBG69716.1
Putative signal peptidase; Cluster 0579 with SCAB26131; Belongs to the peptidase S26 family.
       0.588
CBG69717.1
Putative signal peptidase; PMID: 10520735; cluster 0579 with SCAB26121; Belongs to the peptidase S26 family.
       0.588
CBG69718.1
Putative signal peptidase; PMID: 10520735; Belongs to the peptidase S26 family.
       0.588
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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