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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cabBPutative calcium-binding protein; PMID: 15766784. (70 aa)    
Predicted Functional Partners:
fkbB
Putative peptidyl-prolyl cis-trans isomerase subunit; PMID:8062824.
   
 0.890
fkbP
Peptidyl-prolyl cis-trans isomerase subunit; PMID:1381710.
   
 0.890
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
   
 
 0.877
gmk
Putative guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
 0.869
CBG70604.1
Putative leucine-rich repeat protein; TTA-Leu codon(s) 58 may indicate regulation by BldA.
   
 0.843
CBG70605.1
Putative GTPase.
   
 0.843
CBG69877.1
Putative membrane protein.
       0.753
CBG69875.1
Conserved hypothetical protein.
     
 0.746
CBG69497.1
Putative channel transporter; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 
 0.588
CBG71219.1
Putative integral membrane protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 
 0.588
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.