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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG69912.1Putative extracellular solute-binding lipoprotein. (469 aa)    
Predicted Functional Partners:
CBG69914.1
Putative binding-protein dependent transporter.
 
 
 0.975
CBG69913.1
Putative binding-protein dependent transporter.
 
   0.969
CBG69911.1
Putative AfsR-like regulator; PMID: 10517581; PMID: 15921897; cluster 0230 with SCAB28161 and SCAB28181.
 
 
   0.689
msiK
Putative maltose/cellubiose ABC transporter ATP-binding subunit; PMID: 9068663; PMID: 7494485; Belongs to the ABC transporter superfamily.
  
 
 0.633
CBG72251.1
Conserved hypothetical protein; Hydrophilic N-term.
 
     0.603
CBG68690.1
Putative alpha-mannosidase.
 
     0.600
CBG69002.1
Putative probable solute-binding lipoprotein.
  
     0.548
CBG69906.1
Putative sodium:dicarboxylate symporter; Cluster 0604 with SCAB80081; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
  
    0.548
CBG69908.1
Putative two-component response regulator.
       0.542
CBG69919.1
Conserved hypothetical protein.
       0.542
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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