Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG69957.1Conserved hypothetical protein. (130 aa)    
Predicted Functional Partners:
CBG71194.1
Putative ATP-binding protein.
 
     0.801
CBG71514.1
Putative ATP-binding protein.
 
     0.801
nucS
Conserved hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
       0.661
rarC3
RarC (conservon) homolog; PMID:12657469; conservon.
  
     0.575
CBG69956.1
Putative aldehyde monooxygenase.
  
     0.570
CBG69158.1
Putative AbaA-like regulatory protein; PMID:1569025.
  
     0.561
CBG71075.1
Putative regulator.
  
     0.530
CBG73588.1
Conserved hypothetical protein.
  
     0.482
SCAB_4491
Putative exported protein.
  
     0.481
CBG73921.1
Putative AbaA-like protein; PMID:1569025.
  
     0.473
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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