Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
CBG70030.1Putative SpdD-like protein; PMID: 9620953. (102 aa)    
Predicted Functional Partners:
spdC2
Putative SpdC2 protein; PMID: 9620953.
       0.849
CBG70029.1
Putative replication initiation protein; PMID: 9620953; PMID: 8029324; PMID: 9851040.
       0.755
CBG70028.1
Putative excisionase.
       0.753
CBG70032.1
Putative SpdB-like protein; PMID: 9620953.
       0.713
CBG70033.1
Putative SpdA-like protein; PMID: 9620953.
       0.693
CBG70034.1
Conserved hypothetical protein.
       0.653
CBG70027.1
Putative integrase; Cluster 0485 with SCAB21171; Belongs to the 'phage' integrase family.
       0.573
CBG70035.1
Putative plasmid transfer protein; PMID: 8366038.
       0.543
CBG70036.1
Putative regulatory protein; PMID: 8559072.
       0.543
SCAB_46971
Putative replication initiator protein; PMID: 9620953; PMID: 9851040; pseudo: missing start codon, stop codon in wrong place too.
       0.526
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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