STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG70035.1Putative plasmid transfer protein; PMID: 8366038. (463 aa)    
Predicted Functional Partners:
CBG70033.1
Putative SpdA-like protein; PMID: 9620953.
 
     0.899
CBG70036.1
Putative regulatory protein; PMID: 8559072.
     
 0.806
CBG71744.1
Putative mobile element transfer protein; PMID: 9620953.
 
     0.780
CBG70029.1
Putative replication initiation protein; PMID: 9620953; PMID: 8029324; PMID: 9851040.
 
  
 0.704
CBG70028.1
Putative excisionase.
 
   
 0.679
CBG70027.1
Putative integrase; Cluster 0485 with SCAB21171; Belongs to the 'phage' integrase family.
 
   
 0.669
CBG70032.1
Putative SpdB-like protein; PMID: 9620953.
       0.578
spdC2
Putative SpdC2 protein; PMID: 9620953.
       0.571
CBG68905.1
Putative methyltransferase; Cluster 0445 with SCAB27291.
 
     0.555
CBG70034.1
Conserved hypothetical protein.
       0.554
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.