Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
sodNPutative nickel superoxide dismutase; PMID: 15209499; PMID: 9466266. (131 aa)    
Predicted Functional Partners:
CBG70097.1
Conserved hypothetical protein.
 
   
 0.954
sodF2
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
      
 0.718
cpeB
Catalase/peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
     
 0.599
katE
Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide.
     
 0.555
CBG70104.1
Putative transcriptional regulator.
       0.526
CBG70105.1
Conserved hypothetical protein.
       0.449
amfC
Putative aerial mycelium formation regulatory protein; PMID: 7592414; S. coelicolor and S. griseus amfC only 60%, this CDS has same level of match to both.
 
     0.408
CBG72366.1
Conserved hypothetical protein; PMID:11451671; PMID:16079135; PMID:2575701; db matches only to Cterm DUF region; Nterm low complexity, high GC.
  
     0.407
CBG74327.1
Putative ferredoxin.
  
     0.405
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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