Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CBG70097.1 | sodN | SCAB_29922 | SCAB_29931 | Conserved hypothetical protein. | Putative nickel superoxide dismutase; PMID: 15209499; PMID: 9466266. | 0.963 |
CBG70104.1 | CBG70105.1 | SCAB_29991 | SCAB_30001 | Putative transcriptional regulator. | Conserved hypothetical protein. | 0.964 |
CBG70104.1 | sodN | SCAB_29991 | SCAB_29931 | Putative transcriptional regulator. | Putative nickel superoxide dismutase; PMID: 15209499; PMID: 9466266. | 0.542 |
CBG70105.1 | CBG70104.1 | SCAB_30001 | SCAB_29991 | Conserved hypothetical protein. | Putative transcriptional regulator. | 0.964 |
CBG70105.1 | sodN | SCAB_30001 | SCAB_29931 | Conserved hypothetical protein. | Putative nickel superoxide dismutase; PMID: 15209499; PMID: 9466266. | 0.412 |
CBG72366.1 | sodN | SCAB_53311 | SCAB_29931 | Conserved hypothetical protein; PMID:11451671; PMID:16079135; PMID:2575701; db matches only to Cterm DUF region; Nterm low complexity, high GC. | Putative nickel superoxide dismutase; PMID: 15209499; PMID: 9466266. | 0.407 |
CBG74126.1 | cpeB | SCAB_71331 | SCAB_9531 | Putative enoyl-(acyl-carrier-protein) reductase; PMID:8284673. | Catalase/peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. | 0.636 |
CBG74126.1 | sodN | SCAB_71331 | SCAB_29931 | Putative enoyl-(acyl-carrier-protein) reductase; PMID:8284673. | Putative nickel superoxide dismutase; PMID: 15209499; PMID: 9466266. | 0.400 |
CBG74327.1 | sodN | SCAB_73421 | SCAB_29931 | Putative ferredoxin. | Putative nickel superoxide dismutase; PMID: 15209499; PMID: 9466266. | 0.405 |
amfC | sodN | SCAB_49711 | SCAB_29931 | Putative aerial mycelium formation regulatory protein; PMID: 7592414; S. coelicolor and S. griseus amfC only 60%, this CDS has same level of match to both. | Putative nickel superoxide dismutase; PMID: 15209499; PMID: 9466266. | 0.407 |
cpeB | CBG74126.1 | SCAB_9531 | SCAB_71331 | Catalase/peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. | Putative enoyl-(acyl-carrier-protein) reductase; PMID:8284673. | 0.636 |
cpeB | katE | SCAB_9531 | SCAB_17231 | Catalase/peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. | Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide. | 0.951 |
cpeB | sodN | SCAB_9531 | SCAB_29931 | Catalase/peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. | Putative nickel superoxide dismutase; PMID: 15209499; PMID: 9466266. | 0.596 |
katE | cpeB | SCAB_17231 | SCAB_9531 | Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide. | Catalase/peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. | 0.951 |
katE | sodN | SCAB_17231 | SCAB_29931 | Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide. | Putative nickel superoxide dismutase; PMID: 15209499; PMID: 9466266. | 0.586 |
sodN | CBG70097.1 | SCAB_29931 | SCAB_29922 | Putative nickel superoxide dismutase; PMID: 15209499; PMID: 9466266. | Conserved hypothetical protein. | 0.963 |
sodN | CBG70104.1 | SCAB_29931 | SCAB_29991 | Putative nickel superoxide dismutase; PMID: 15209499; PMID: 9466266. | Putative transcriptional regulator. | 0.542 |
sodN | CBG70105.1 | SCAB_29931 | SCAB_30001 | Putative nickel superoxide dismutase; PMID: 15209499; PMID: 9466266. | Conserved hypothetical protein. | 0.412 |
sodN | CBG72366.1 | SCAB_29931 | SCAB_53311 | Putative nickel superoxide dismutase; PMID: 15209499; PMID: 9466266. | Conserved hypothetical protein; PMID:11451671; PMID:16079135; PMID:2575701; db matches only to Cterm DUF region; Nterm low complexity, high GC. | 0.407 |
sodN | CBG74126.1 | SCAB_29931 | SCAB_71331 | Putative nickel superoxide dismutase; PMID: 15209499; PMID: 9466266. | Putative enoyl-(acyl-carrier-protein) reductase; PMID:8284673. | 0.400 |
page 1 of 2