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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG70178.1Putative peptidase; Cluster 0625 wtih SCAB82771. (475 aa)    
Predicted Functional Partners:
CBG70179.1
Putative ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
       0.869
CBG70180.1
Putative ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
       0.834
CBG70177.1
Putative NUDIX hydrolase.
       0.773
dapE
Succinyl-diaminopimelate desuccinylase.
      
 0.626
CBG68401.1
Conserved hypothetical protein.
 
 
    0.553
CBG70181.1
Putative DNA-binding protein.
       0.542
CBG70182.1
Putative integral membrane protein.
       0.542
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.