Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBG70206.1Conserved hypothetical protein. (194 aa)    
Predicted Functional Partners:
CBG70205.1
Conserved hypothetical protein.
       0.698
CBG73371.1
Conserved hypothetical protein.
  
     0.645
CBG70204.1
Conserved hypothetical protein.
       0.636
CBG74493.1
Conserved hypothetical protein.
  
     0.632
CBG73825.1
Putative ABC transporter integral membrane subunit.
  
     0.619
CBG70203.1
Putative integral membrane protein.
       0.602
CBG72457.1
Conserved hypothetical protein.
  
     0.594
CBG72960.1
Putative integral membrane protein.
  
     0.590
CBG72059.1
Putative integral membrane protein.
  
     0.568
CBG74087.1
Conserved hypothetical protein.
  
     0.568
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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