Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fdxA1Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (105 aa)    
Predicted Functional Partners:
CBG70842.1
Putative oxidoreductase; PMID: 15328113.
  
 
 0.961
CBG73321.1
Putative thiamine-pyrophosphate-binding oxidoreductase alpha subunit; PMID:15328113.
  
 
 0.961
CBG70228.1
Putative aminotransferase.
    
 0.839
idh
NADP(+)-dependent isocitrate dehydrogenase; Belongs to the monomeric-type IDH family.
  
  
 0.816
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
  
 0.815
CBG70231.1
Conserved hypothetical protein; PMID: 9748440; PMID: 8458843.
       0.691
CBG70843.1
Putative oxidoreductase; PMID: 15328113.
  
 
 0.625
CBG73320.1
Putative thiamine-pyrophosphate-binding oxidoreductase subunit.
  
 
 0.625
CBG73229.1
Putative dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
   
  
 0.552
SCAB_0971
Putative acyl-[acyl-carrier protein] desaturase.
   
  
 0.538
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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