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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAB_3141Conserved hypothetical protein. (379 aa)    
Predicted Functional Partners:
SCAB_3151
Putative oxidoreductase.
 
     0.880
SCAB_3161
Conserved hypothetical protein.
 
     0.875
CBG71445.1
Conserved hypothetical protein.
  
     0.603
SCAB_3131
Conserved hypothetical protein.
       0.572
CBG70653.1
Conserved hypothetical protein.
  
     0.530
CBG74849.1
Putative secreted protein.
  
     0.529
CBG75879.1
Conserved hypothetical protein.
  
    0.499
CBG69079.1
Putative autotransporter.
  
     0.467
CBG70948.1
Putative lipoprotein.
  
     0.414
CBG71195.1
Putative lipoprotein.
  
     0.401
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.