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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAB_3151Putative oxidoreductase. (360 aa)    
Predicted Functional Partners:
SCAB_3161
Conserved hypothetical protein.
 
 0.999
CBG68821.1
Putative respiratory chain oxidoreductase; TTA-Leu codon(s) 59 may indicate regulation by BldA.
  
 
 0.955
SCAB_5931
Putative P450-like protein.
  
 0.948
SCAB_9321
P450-like protein; Belongs to the cytochrome P450 family.
  
 0.948
SCAB_0971
Putative acyl-[acyl-carrier protein] desaturase.
 
 
 0.931
CBG68503.1
Putative acyl-[acyl-carrier protein] desaturase.
 
 
 0.930
CBG72446.1
Putative membrane-located fatty acid desaturase.
     
 0.917
CBG74925.1
Putative polyketide synthase.
  
 
 0.889
CBG75341.1
Putative type I polyketide synthase.
  
 
 0.889
CBG74001.1
Conserved hypothetical protein; May be associated with iron-sulphur cluster assembly - with SCAB70051?.
  
 0.884
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.