STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG70300.1Conserved hypothetical protein; Lantibiotics biosynthesis. (254 aa)    
Predicted Functional Partners:
CBG69157.1
Putative DNA-binding protein.
 
     0.775
CBG71073.1
Conserved hypothetical protein.
 
     0.775
CBG75527.1
Putative DNA-binding protein.
 
     0.775
CBG68840.1
Conserved DNA-binding protein SC5C7.22c.
 
     0.774
CBG73920.1
Putative DNA-binding protein.
 
     0.774
CBG72278.1
Conserved hypothetical protein; PMID:11347268.
  
     0.771
CBG73156.1
Putative DNA-binding protein.
  
     0.771
CBG72734.1
Putative regulatory protein.
  
     0.770
CBG71075.1
Putative regulator.
  
     0.768
CBG72264.1
Putative chitinase-promoter-binding protein.
  
     0.768
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.