Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SCAB_3201Putative secreted protein; Contains PF01839 FG-GAP repeats see also SCAB1291, SCAB58141; TTA-Leu codon(s) 19 may indicate regulation by BldA. (487 aa)    
Predicted Functional Partners:
CBG72967.1
Putative secreted protein.
 
   
 0.701
SCAB_9921
Putative secreted protein.
  
     0.701
CBG71846.1
4.1.7.
  
     0.689
CBG72135.1
Putative secreted protein.
 
     0.656
CBG72134.1
Putative secreted protein.
 
   
 0.639
CBG74451.1
Putative integral membrane protein; PMID:12608576.
 
   
 0.490
CBG74749.1
Conserved hypothetical protein.
  
     0.483
CBG69131.1
Putative exported protease; PMID:2187155.
  
 
 0.464
CBG69638.1
Putative large Pro/Ala/Gly-rich protein.
  
  
 0.458
CBG71115.1
Conserved hypothetical protein.
  
    0.438
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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