Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBG70307.1Conserved hypothetical protein; Lantibiotics biosynthesis. (348 aa)    
Predicted Functional Partners:
CBG70305.1
Putative Lantibiotic dehydratase; Lantibiotic biosynthesis.
 
  
 0.968
CBG70306.1
Putative lanthionine synthetase C-like protein; Lantibiotics biosynthesis; TTA-Leu codon(s) 221 may indicate regulation by BldA.
 
   
 0.965
SCAB_32011
Conserved hypothetical protein; Pseudo: missing stop codon.
   
 0.946
CBG70308.1
Conserved hypothetical protein; PMID: 12127493; cluster 0318 with SCAB0221.
 
     0.929
CBG68821.1
Putative respiratory chain oxidoreductase; TTA-Leu codon(s) 59 may indicate regulation by BldA.
   
 
 0.775
CBG70304.1
Conserved hypothetical protein; Lantibiotics biosynthesis.
     
 0.650
SCAB_0221
Conserved hypothetical protein; PMID: 12127493; cluster 0318 with SCAB32061.
  
     0.649
SCAB_9911
Putative LuxR-family regulator.
  
    0.640
CBG75282.1
Putative regulator.
  
    0.634
CBG73315.1
Conserved hypothetical protein; Belongs to the UPF0255 family.
  
     0.615
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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