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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG70308.1Conserved hypothetical protein; PMID: 12127493; cluster 0318 with SCAB0221. (322 aa)    
Predicted Functional Partners:
CBG70307.1
Conserved hypothetical protein; Lantibiotics biosynthesis.
 
     0.931
CBG70306.1
Putative lanthionine synthetase C-like protein; Lantibiotics biosynthesis; TTA-Leu codon(s) 221 may indicate regulation by BldA.
 
     0.877
CBG70305.1
Putative Lantibiotic dehydratase; Lantibiotic biosynthesis.
 
    0.872
CBG74919.1
Conserved hypothetical protein; PMID:14652074; PMID:15563836; PMID:10873841; TTA-Leu codon(s) 81 may indicate regulation by BldA; perhaps involved with neighbouring gene cluster.
 
     0.619
SCAB_32011
Conserved hypothetical protein; Pseudo: missing stop codon.
 
     0.583
CBG73304.1
Conserved hypothetical protein; No signficant Pfam A domains.
  
     0.541
CBG70309.1
Hypothetical protein.
       0.512
CBG75347.1
Putative methoxymalonate biosynthesis protein; PMID:16207901; PMID:16085885; PMID:12060743.
  
     0.505
CBG70304.1
Conserved hypothetical protein; Lantibiotics biosynthesis.
       0.496
CBG72193.1
Putative calcium binding protein.
  
     0.474
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.