Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CBG70308.1Conserved hypothetical protein; PMID: 12127493; cluster 0318 with SCAB0221. (322 aa)    
Predicted Functional Partners:
CBG70307.1
Conserved hypothetical protein; Lantibiotics biosynthesis.
 
     0.929
CBG70306.1
Putative lanthionine synthetase C-like protein; Lantibiotics biosynthesis; TTA-Leu codon(s) 221 may indicate regulation by BldA.
 
     0.877
CBG70305.1
Putative Lantibiotic dehydratase; Lantibiotic biosynthesis.
 
    0.871
CBG74919.1
Conserved hypothetical protein; PMID:14652074; PMID:15563836; PMID:10873841; TTA-Leu codon(s) 81 may indicate regulation by BldA; perhaps involved with neighbouring gene cluster.
 
     0.616
SCAB_32011
Conserved hypothetical protein; Pseudo: missing stop codon.
 
     0.578
CBG73304.1
Conserved hypothetical protein; No signficant Pfam A domains.
  
     0.541
CBG75347.1
Putative methoxymalonate biosynthesis protein; PMID:16207901; PMID:16085885; PMID:12060743.
  
     0.505
CBG70309.1
Hypothetical protein.
       0.500
CBG70304.1
Conserved hypothetical protein; Lantibiotics biosynthesis.
       0.496
CBG72193.1
Putative calcium binding protein.
  
     0.474
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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