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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBG70309.1Hypothetical protein. (110 aa)    
Predicted Functional Partners:
CBG70305.1
Putative Lantibiotic dehydratase; Lantibiotic biosynthesis.
  
  
 0.746
CBG70306.1
Putative lanthionine synthetase C-like protein; Lantibiotics biosynthesis; TTA-Leu codon(s) 221 may indicate regulation by BldA.
     
 0.581
gltB
Putative Ferredoxin-dependent glutamate synthase 1; PMID:7727752.
   
  
 0.550
CBG70308.1
Conserved hypothetical protein; PMID: 12127493; cluster 0318 with SCAB0221.
       0.512
CBG70307.1
Conserved hypothetical protein; Lantibiotics biosynthesis.
       0.509
ispE
Putative isopentenyl monophosphate kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
   
    0.424
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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