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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rarA2RarA (conservon) homologue; PMID: 12657469; cluster 0205 with SCAB20261 and SCAB79171. (434 aa)    
Predicted Functional Partners:
CBG69622.1
Putative sensory histidine kinase.
  
 
 0.932
SCAB_0821
Conserved hypothetical protein; PAS domain may indicate role in signal detection.
  
 
 0.899
rarE2
RarE (conservon) homolog; PMID: 12657469; PMID: 15111132; Belongs to the cytochrome P450 family.
 
   0.866
rarB2
RarB (conservon) homologue; PMID: 12657469.
 
     0.817
rarC1
RarC (conservon) homologue; Conservon.
 
 
 0.816
rarC4
RarC (conservon) homologue; Conservon; TTA-Leu codon(s) 14 may indicate regulation by BldA.
 
 
 0.803
rarD2
RarD (conservon) homologue; PMID: 12657469; conservon; TTA-Leu codon(s) 129 may indicate regulation by BldA.
 
    0.793
rarB1
RarB (conservon) homologue; PMID:12657469; conservon.
 
     0.787
rarB4
RarB (conservon) homologue; PMID: 12657469; conservon.
 
     0.780
CBG74846.1
RarC (conservon) homologue; PMID: 12657469; truncated conservon.
 
 
 0.770
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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